Tag Archives: data

New Stonehenge discovery: how we found a prehistoric monument hidden in data



Archaeologists studying the monument site from above ground.
University of Bradford

Vince Gaffney, University of Bradford and Chris Gaffney, University of Bradford

The chances of finding another major archaeological monument near Stonehenge today are probably very small given the generations of work that has gone into studying the site. Stumbling across such a monument that measured more than 2km across must be highly unlikely. And yet that is exactly what our team from the Anglo-Austrian “Stonehenge Hidden Landscapes” research project has done.

We discovered a circle of pits, each ten metres or more in diameter and at least five metres deep, around Stonehenge’s largest prehistoric neighbour, the so-called super henge at Durrington Walls. More amazingly, the initial evidence for this discovery was hidden away in terabytes of remote sensing data and reams of unpublished literature generated by archaeologists over the years.

Durrington is one of Britain’s largest neolithic monuments. Comprising banks and ditches measuring 500 metres across, the henge was constructed over 4,500 years ago by early farmers, around the time that Stonehenge achieved it’s final, distinctive form. The site itself overlies what may have been one of north west Europe’s largest neolithic villages. Researchers suggest that the communities that built Stonehenge lived here.

The major archaeological monuments in the Stonehenge Landscape, outlined in green.
Vincent Gaffney, Author provided

Over the last decade, there has been a quiet revolution in the landscape around Stonehenge as archaeologists have gained access to enhanced remote sensing technologies. Around 18 sq km of landscape around Stonehenge has now been surveyed through geophysics. Now archaeologists are joining the dots within these enormous data set, and making associations they might not have done otherwise.

The first geophysical anomalies related to our new discovery were recorded (but not published) some years ago when a small number of peculiar circular splodges in the magnetometry data south of Durrington. These were initially interpreted as shallower features, possibly dew ponds, unlinked to the henge. But our research group realised that similar features had been recorded far to the north of the henge by archaeological contractors, interpreted as natural sink holes caused by solution of the chalk bedrock.




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How technology, not spades, revealed what lies beneath Stonehenge


Our mapping work suggested all these features were actually linked and part of a single, massive circuit surrounding the henge monument at Durrington. Detailed study, including drilling for underground samples, revealed the anomalies as massive pits, with near vertical sides, containing worked flint and bone. Radiocarbon dating suggested the features were from the same time as the henge.

Shafts and pits are known in prehistoric British archaeology, but the sheer number of massive pits and the scale of the Durrington circuit is unparalleled in the UK. The internal area of the ring is likely to be at least around three sq km. This arrangement of pits certainly gives the impression they bound an important space, and here there may be a comparison to be made with Stonehenge itself.

Stonehenge actually has a territory sometimes called the “Stonehenge Envelope”. This is marked by lines of later burial mounds clustering around the monument, covering an area similar to that of Durrington Walls. The space is marked so clearly that archaeologists have suggested only a special few people may have been allowed to enter the area.

This association of Stonehenge with death and burial has also led to interpretations that it was reserved for ancestors. Durrington, in contrast, is believed to be associated with the living. But our discovery of the pits suggest that Durrington did have a similar special outer area, as large as that associated with Stonehenge.

The pit circle also provide insights into the mindset of the people who built these massive structures. The pits appear to be laid out to include a much earlier monument: the Larkhill causewayed enclosure.

The pits form a circle around Durrington Walls in line with the Larkhill causewayed enclosure.
Vincent Gaffney, Author provided

Built more than 1,000 years before the Durrington Walls henge, such ditched enclosures were the first large communal constructions in Britain and they were clearly important to early farming communities. The decision to appropriate this earlier monument into the circuit of the henge must have been a deliberate, symbolic statement.

In fact, the pits appear to have been laid out in a notional circle so that they were all the same walking distance from the henge as the causewayed enclosure. Given the scale involved and the shape of the landscape, which includes several valleys, this would have been difficult to achieve without the existence of a tally or counting system. This is the first evidence that such a system may have been used by neolithic people to lay out what must be considered a sacred geometry, at the scale suggested by the Durrington pits.

The unexpected discovery of a unique set of massive pits within the Stonehenge landscape may also have implications in terms of the site’s management. There are similar individual features scattered throughout the landscape that are unexplored but may be of equal significance. Yet a proposed road (the A303) development includes a road tunnel that will pass close to the iconic site of Stonehenge itself and impact a large corridor of land directly associated with the site.

The issue of value is complex when we’re discussing a period of history in which the digging of pits clearly had a multitude of social values. We would do well to consider the implication of such discoveries before a tragic loss ensues. Future generations are unlikely to forgive us if we damage this unique landscape.The Conversation

Vince Gaffney, Anniversary Chair in Landscape Archaeology, University of Bradford and Chris Gaffney, Senior Lecturer in Archaeological Geophysics, University of Bradford

This article is republished from The Conversation under a Creative Commons license. Read the original article.


The healing power of data: Florence Nightingale’s true legacy



Wikimedia Commons, CC BY-SA

Alice Richardson, Australian National University; Jessica Kasza, Monash University, and Karen Lamb, University of Melbourne

When you’re in a medical emergency, you don’t typically think of calling a statistician. However, the COVID-19 outbreak has shown just how necessary a clear understanding of data and modelling is to help prevent the spread of disease.

One person understood this a long time ago. Were she alive today, Florence Nightingale would understand the importance of data in dealing with a public health emergency.

Nightingale is renowned for her career in nursing, but less well known for her pioneering work in medical statistics. But it was actually her statistical skills that led to Nightingale saving many more lives.




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An early spark

Nightingale was one of the first female statisticians. She developed an early passion for statistics. As a child she collected shells and supplemented her collection with tables and lists. Nightingale was home-schooled by her father but insisted on learning maths from a mathematician before she trained as a nurse.

A photo of Nightingale taken circa 1860.
Wikimedia Commons

Upon arriving at the British military hospital in Turkey in 1856, Nightingale was horrified at the hospital’s conditions and a lack of clear hospital records.

Even the number of deaths was not recorded accurately. She soon discovered three different death registers existed, each giving a completely different account of the deaths among the soldiers. Using her statistical skills, Nightingale set to work to introduce new guidelines on how to record sickness and mortality across military hospitals.

This helped her better understand both the numbers and causes of deaths. Now, worldwide, there are similar standards for recording diseases, such as the International Classification of Diseases.

Outbreak monitoring

The ability to compare datasets from different places is critical to understanding outbreaks. One of the challenges in monitoring the COVID-19 pandemic has been the lack of standardised datasets experts can compare on the number of people infected. This is due to differences in testing rules in different countries.

More than 150 years after Nightingale pointed out the need to standardise datasets before comparing them, we are certain she would have something to say about this.




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With her improved data, Nightingale put her statistical skills to use. She discovered deaths due to disease were more than seven times the number of deaths due to combat, because of unsanitary hospital conditions.

However, knowing numbers alone have limited persuasive powers, Nightingale used her skills in statistical communication to convince the British parliament of the need to act. She avoided the dry tables used by most statisticians of the time, and instead devised a novel graph to illustrate the impact of hospital and nursing practice reform on army mortality rates.

Florence Nightingale’s graph showing deaths due to disease, wounds and other causes in the Crimean War.
Wikimedia/commons

Today, graphs remain one of the most effective ways to understand the effects of health care interventions, including those used to illustrate the effectiveness of physical distancing to curb COVID-19’s spread.

Flattening the curve is another way of saying slowing the spread. The epidemic is lengthened, but we reduce the number of severe cases, causing less burden on public health systems. The Conversation/CC BY ND

Florence Nightingale down under

Nightingale may not have travelled much after her wartime experience in Turkey, but she was engaged in improving public health in many countries, including Australia.

She wrote papers on the benefits of pavilion-style hospital building designs, which were later incorporated into Australian hospitals. This style consists of small wings, or pavilions, leading off a central corridor – this is convenient for nursing staff and encourages good ventilation.

In 1868, Lucy Osburn headed the first team of nurses sent to Australia to establish Nightingale-style nursing. One of the team’s first tasks was to nurse Prince Alfred, Queen Victoria’s second son, who had been shot in an attempted assassination.

Nightingale never visited Australia herself, but this did not stop her using her usual tactics of requesting data from her wide network of contacts and drawing conclusions from what she found. She was a prolific correspondent – we have more than 12,000 of her letters, and those are only the ones which haven’t been burned, lost or otherwise destroyed.

Nightingale would surely have embraced 21st-century communication. We can imagine her sitting at her laptop tweeting under the moniker @ladywiththelamp.

A trailblazer for women

In 1858, Nightingale’s achievements in statistics were recognised by the Royal Statistical Society in the UK, when she became the first woman Fellow of the Society.

After Nightingale’s fellowship, it would be more than 100 years before a woman was elected President of the Royal Statistical Society, with Stella Cunliffe’s election in 1975. It was only in 1995 that the Statistical Society of Australia had a woman as president, with the election of Helen MacGillivray.

As in many STEM (Science, Technology, Engineering and Mathematics) disciplines, female statisticians are still fighting for equal recognition. To date, only two women have received the Statistical Society of Australia’s highest honour, the Pitman Medal.

But it’s clear female statisticians are still making headway. In 2019, five major statistical associations had women presidents. Today, on her 200th birthday, Nightingale would have been proud.The Conversation

Presidents of Statistical Societies in 2019. L-R: Karen Kafadar (American Statistical Association), Louise Ryan (International Biometric Society), Deborah Ashby (Royal Statistical Society), Helen MacGillivray (International Statistical Institute), Susan Ellenberg, Jessica Utts (former President of the American Statistical Association), Susan Murphy (Institute of Mathematical Statistics).
Twitter/Author provided

Alice Richardson, Associate professor, Australian National University; Jessica Kasza, Senior lecturer, Monash University, and Karen Lamb, Biostatistician, University of Melbourne

This article is republished from The Conversation under a Creative Commons license. Read the original article.


From Joseph Banks to big data, herbaria bring centuries-old science into the digital age



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Specimens in herbaria include “pickled” plants in pots (shown here), dried specimens and fruits or seeds preserved whole.
Ainsley Calladine, State Herbarium of South Australia , Author provided

Michelle Waycott, University of Adelaide

Last month, priceless botanical specimens were destroyed after an apparent miscommunication between scientists and Australian customs officials.

Although unfortunate, the incident has focused attention on the importance of being able to share scientific specimens around the world, and the vital role that herbaria play in modern science.

Despite being sometimes described as “museums for plants”, herbaria aren’t just natural history storage and displays. In this era of DNA barcoding, big data, biosecurity threats, bio-prospecting, and global information sharing, herbaria are complex and evolving institutions.

The modern herbarium is steeped in tradition and full of antiquities, but it also leads the application of modern approaches to understanding our past, present and future natural world.

The power of 8 million specimens

If you tell someone that you work at a herbarium, most will ask “what’s that?”, or perhaps “oh, what kind of herbs do you grow there?”.

Herbaria house historically important plant specimens with precise details of their collection. The card on this 247 year old example reads: Viitadinia scacbra, DC. Australia: Queensland. Bustard Bay 24°05’S 151°28’E. 23 May 1770. Collected by Joseph Banks and Daniel Solander, Captain Cook’s first voyage 1768-1771.
The State Herbarium of South Australia, Author provided

Conventionally, a herbarium is a collection of preserved plant specimens that are stored and managed in an organised and structured way by curators and botanists who specialise in plant taxonomy and systematics.

There are some 3,000 active herbaria worldwide. As a collective, they contain more than 380 million specimens, spanning collections dating back as far as 500 years ago.

In Australia there are nine state, territory or national herbaria that, along with some university collections, hold close to eight million specimens. Four major Australian herbaria hold over a million specimens:

Herbarium specimens exist in many forms, including “pickled” plants or plant parts such as flowers or other delicate structures, dried specimens still attached to the surface on which they grew (like tree bark and rocks), and fruits or seeds preserved whole. But the overwhelming majority are dried, pressed plant specimens attached to archival card. Alongside these specimens there are sometimes drawings, paintings or photographs of the species, which capture details that are not discernible in the preserved specimen.

The Australasian Virtual Herbarium

The plant specimens don’t just exist on their own inside herbaria. Along with the specimens, the accompanying information is vital, such as where and when they were collected, specific details of the environments where they were collected, and who collected them.

In Australia, the major herbaria have been actively adding this information into a digital repository, resulting in a world-leading dataset: the Australasian Virtual Herbarium.

Sites of collection of Australian and New Zealand herbarium samples of the weed ‘Salvation Jane’ as displayed on the Australian Virtual Herbarium website.
Australian Virtual Herbarium

The collation of these resources helped to inspire the development of the Atlas of Living Australia, and gives anyone with an internet connection access to specimen records from around Australia and the world.

Specimen-based, online data sets provide evidence of what species are found in a particular place at a particular time. They are a direct link from the presence of a species in the field, to collections of physical specimens held in herbaria, with the current name (that is, the latest changes in taxonomy) for that specimen.

There are many applications of such evidence including tracking changing species distributions such as ferals and weeds (an example of the weed “Salvation Jane” is shown in the figure above). Herbaria have been active in supporting detection of biosecurity threats. New introductions of species to Australia need careful determination of their identity and herbaria work with agencies to assist with this.

Sometimes, herbarium or museum specimens are the only evidence that a species existed at all. For example Gentianella clelandii, a species of native Gentian, is only known from the collection made of it in 1947 in the South East of South Australia. This species and others like it are likely to have been lost as a result of changing land use in the region at this time.

Samples from Cook, Flinders and Baudin

Australia’s banksia is a well loved plant. This specimen card reads: Banksia serrata L/F New Holland, Banks and Solander, Botany Bay, April 1770.
National Herbarium of Victoria, Author provided

Important historical, scientific or cultural plant specimens exist in herbarium collections.

Plants collected during the voyages of early European explorers – including Dampier, Cook, Flinders and Baudin – are still found in herbaria. Some of these plants were also shipped live back to Europe, and have been grown in gardens and in scientific collections all over the world.

Remarkably, due to the care in methods of preserving them, these specimens are often in excellent condition more than 200 years after their collection and still able to be used productively in scientific research.

Type specimen collected by Robert Brown, who circumnavigated Australia with Matthew Flinders. The card reads: Hakea rugosa R. Br. South Australia: Port Lincoln (Bay 10) March 1802.
State Herbarium of South Australia, Author provided

These historical specimens are often the first known collections of a previously undescribed species. If so, they will be designated as “type” specimens by the taxonomist naming the new species. Type specimens are very important as they allow the work of taxonomists to have a global frame of reference. This allows scientists to work out if two (or more) species have been assigned the same name.

Herbarium records enable resource managers to track distributions of both pest plants and endangered plants, providing a historical and current view of how widely spread and common the various species are across Australia.

You say River Red Gum, I say Yarrow

Taxonomy is the science of describing, classifying and naming plants, animals and microorganisms of the world. Taxonomists do the work of describing and arranging plant species into classifications based on their morphology (what they look like), their genes and sometimes other features.

While highly scientific by nature, taxonomy is also vital to society at large. For invasive plant control, for border control, for environmental management and for urban planning, there must be no ambiguity as to which plant species we are talking about. Common names of plants can be misleading, the same plant often having many different common names. For example, the Australian iconic tree species Eucalyptus camaldulensis is known as River Red Gum, Blue Gum, Murray Red Gum, Red Gum, River Gum and Yarrow. We know these are all the same species, because taxonomists can compare herbarium specimens and determine if they share the same characteristics.

Expansion of the search for new biological compounds for human use — including medicines, food, cosmetics and other applications — exemplifies the problem of misapplied taxonomic names. For example the search for bioactive compounds in marine algae yields very different results for different species.

But imagine if there wasn’t a way to apply the precision of taxonomy in the search for information on the characteristics of a species to be used for biological control? Not only would time and money be lost, but the incorrect species could be used and unforseen outcomes may occur.

An example from the insect world is the Southeast Asian termite. A potentially harmful species of the termite genus Coptotermes was known regionally by another name, affecting its management as a pest causing building damage in the Americas and Malaysia.

A botanist reviews a herbarium sample, in this case Helichrysum gatessi, or ‘the everlasting flower’
State Herbarium of South Australia, Author provided

Herbaria as a research resource

In addition to storing and organising specimens, larger or highly specialised herbaria usually have an associated research program. Focus scientific areas typically include taxonomy, systematics (how living things are classified and named), evolutionary biology, conservation biology and applied botany (using plants for economic benefit) .

Many herbaria have molecular genetics laboratories attached to them. DNA can be extracted from many specimens, even very old ones, and thus they can become a core part of ongoing DNA based scientific research. Today, DNA barcoding can provide a rapid tool for identifying species when flowers or fruits are not available, or if we have only fragments. Globally, DNA barcodes are now available for more than 265,448 species in the BOLD database. This aggregation of DNA sequences, which for plants are linked to herbarium vouchers, are a global resource that can be used in a “big data” context to explore ideas.

The value of herbaria samples extends beyond just the plants themselves. Herbarium specimens have been used to collate data for inferring changes in flowering times, leaf morphology and species ranges with climatic shifts.

Scientists also analyse chemicals that herbarium specimens have been exposed to, such as heavy metals associated with urban development, and different elements incorporated as leaves grow. Knowledge about waxes on leaf surfaces, as well as inhabitation by insects, fungi and bacteria are all possible through herbarium samples.

The global network of herbaria share specimens so that taxonomists and other researchers can benefit from their existence. With online resources making it known exactly what specimens are in which herbarium, there is an ever growing set of demands made on the use of specimens.

The ConversationCurators who look after collections must balance the requests for using specimens in the present with long term preservation. The ability to track the impact of climate change and other unforeseen influences on plant health may make our current herbaria collections even more priceless in years to come.

Michelle Waycott, Professor, School of Biological Sciences, University of Adelaide and Chief Botanist, State Herbarium of South Australia, University of Adelaide

This article was originally published on The Conversation. Read the original article.


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